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CRISPR-U™ Gene Knockout Cell Line Strategy

Trp53 Gene Knockout Strategy

CRISPR-U™ technology (CRISPR based), developed by Ubigene, is more efficient than general CRISPR/Cas9 technology in double-strand breaking and homologous recombination. With CRISPR-U™, Ubigene has successfully edited over 3000 genes on more than 200 types of cell lines.
Objective
To create a Mouse Trp53 Knockout model in cell line by CRISPR-U™-mediated genome engineering.
Target gene info
Official symbol
Trp53
Gene id
22059
Organism
Mus musculus
Gene type
protein-coding
Official full symbol
transformation related protein 53
Also known as
Tp53, bbl, bfy, bhy, p44, p53
Genomic regions
Chromosome 11
Summary
This gene encodes tumor protein p53, which responds to diverse cellular stresses to regulate target genes that induce cell cycle arrest, apoptosis, senescence, DNA repair, or changes in metabolism. p53 protein is expressed at low level in normal cells and at a high level in a variety of transformed cell lines, where it's believed to contribute to transformation and malignancy. p53 is a DNA-binding protein containing transcription activation, DNA-binding, and oligomerization domains. It is postulated to bind to a p53-binding site and activate expression of downstream genes that inhibit growth and/or invasion, and thus function as a tumor suppressor. Mice deficient for this gene are developmentally normal but are susceptible to spontaneous tumors. Evidence to date shows that this gene contains one promoter, in contrast to alternative promoters of the human gene, and transcribes a few of splice variants which encode different isoforms, although the biological validity or the full-length nature of some variants has not been determined.
Strategy Summary
This gene has 4 protein coding transcripts:
Transcript ID Name bp Protein Biotype CCDS UniProt Match Flags
ENSMUST00000108658.10 Trp53-203 1771 390aa Protein coding CCDS36193 P02340 Q549C9 Ensembl Canonical, GENCODE basic, APPRIS P4, TSL:1,
ENSMUST00000171247.8 Trp53-206 1867 381aa Protein coding CCDS48826 Q80ZA1 GENCODE basic, TSL:1,
ENSMUST00000108657.4 Trp53-202 1822 378aa Protein coding I7HIK9 GENCODE basic, TSL:1,
ENSMUST00000005371.12 Trp53-201 1772 387aa Protein coding A0A158SIS7 GENCODE basic, APPRIS ALT1, TSL:1,
ENSMUST00000147512.2 Trp53-205 3275 No protein Protein coding CDS not defined - TSL:1,
ENSMUST00000130540.2 Trp53-204 403 No protein Protein coding CDS not defined - TSL:3,
Ubigene Red Cotton Transcript
Frame-shift
Fragment A
Fragment B
Strategy

Project Comprehensive Difficulty Assessment

According to the Red Cotton database: the CRISPR gene-editing strategy design is Unknown.
Knockout project comprehensive difficulty is thus assessed as Unknown.
Work flow
Ubigene Red Cotton Workflow

Ubigene - Make genome editing easier

Ubigene is an international high-technology enterprise focused on gene-editing cells. Our exclusive CRISPR-U™ technology has 10-20 times more efficient editing than traditional methods, easily achieving gene knockout, point mutation, and knock-in. Based on CRISPR-U™ technology, Ubigene has accumulated over 5000 successful gene-editing cases from more than 200 cell lines including iPSC and ESC, and has established a KO Cell Line Bank with 3500+ KO cell lines and Red Cotton™ gRNA Plasmid Bank with 10000+ gRNA plasmids available in stock.

Ubigene focuses on technological innovation and product development, of which EZ-editor™ series products that cover the whole workflow of gene-editing keep improving. Ubigene will move on toward our goal of "Make genome editing easier" and we won't stop!

Cell products

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